115 lines
4.8 KiB
VimL
115 lines
4.8 KiB
VimL
if !exists('g:polyglot_disabled') || index(g:polyglot_disabled, 'vim') == -1
|
|
|
|
" Vim syntax file
|
|
" Language: AceDB model files
|
|
" Maintainer: Stewart Morris (Stewart.Morris@ed.ac.uk)
|
|
" Last change: Thu Apr 26 10:38:01 BST 2001
|
|
" URL: http://www.ed.ac.uk/~swmorris/vim/acedb.vim
|
|
|
|
" Syntax file to handle all $ACEDB/wspec/*.wrm files, primarily models.wrm
|
|
" AceDB software is available from http://www.acedb.org
|
|
|
|
" quit when a syntax file was already loaded
|
|
if exists("b:current_syntax")
|
|
finish
|
|
endif
|
|
|
|
syn keyword acedbXref XREF
|
|
syn keyword acedbModifier UNIQUE REPEAT
|
|
|
|
syn case ignore
|
|
syn keyword acedbModifier Constraints
|
|
syn keyword acedbType DateType Int Text Float
|
|
|
|
" Magic tags from: http://genome.cornell.edu/acedocs/magic/summary.html
|
|
syn keyword acedbMagic pick_me_to_call No_cache Non_graphic Title
|
|
syn keyword acedbMagic Flipped Centre Extent View Default_view
|
|
syn keyword acedbMagic From_map Minimal_view Main_Marker Map Includes
|
|
syn keyword acedbMagic Mapping_data More_data Position Ends Left Right
|
|
syn keyword acedbMagic Multi_Position Multi_Ends With Error Relative
|
|
syn keyword acedbMagic Min Anchor Gmap Grid_map Grid Submenus Cambridge
|
|
syn keyword acedbMagic No_buttons Columns Colour Surround_colour Tag
|
|
syn keyword acedbMagic Scale_unit Cursor Cursor_on Cursor_unit
|
|
syn keyword acedbMagic Locator Magnification Projection_lines_on
|
|
syn keyword acedbMagic Marker_points Marker_intervals Contigs
|
|
syn keyword acedbMagic Physical_genes Two_point Multi_point Likelihood
|
|
syn keyword acedbMagic Point_query Point_yellow Point_width
|
|
syn keyword acedbMagic Point_pne Point_pe Point_nne Point_ne
|
|
syn keyword acedbMagic Derived_tags DT_query DT_width DT_no_duplicates
|
|
syn keyword acedbMagic RH_data RH_query RH_spacing RH_show_all
|
|
syn keyword acedbMagic Names_on Width Symbol Colours Pne Pe Nne pMap
|
|
syn keyword acedbMagic Sequence Gridded FingerPrint In_Situ Cosmid_grid
|
|
syn keyword acedbMagic Layout Lines_at Space_at No_stagger A1_labelling
|
|
syn keyword acedbMagic DNA Structure From Source Source_Exons
|
|
syn keyword acedbMagic Coding CDS Transcript Assembly_tags Allele
|
|
syn keyword acedbMagic Display Colour Frame_sensitive Strand_sensitive
|
|
syn keyword acedbMagic Score_bounds Percent Bumpable Width Symbol
|
|
syn keyword acedbMagic Blixem_N Address E_mail Paper Reference Title
|
|
syn keyword acedbMagic Point_1 Point_2 Calculation Full One_recombinant
|
|
syn keyword acedbMagic Tested Selected_trans Backcross Back_one
|
|
syn keyword acedbMagic Dom_semi Dom_let Direct Complex_mixed Calc
|
|
syn keyword acedbMagic Calc_upper_conf Item_1 Item_2 Results A_non_B
|
|
syn keyword acedbMagic Score Score_by_offset Score_by_width
|
|
syn keyword acedbMagic Right_priority Blastn Blixem Blixem_X
|
|
syn keyword acedbMagic Journal Year Volume Page Author
|
|
syn keyword acedbMagic Selected One_all Recs_all One_let
|
|
syn keyword acedbMagic Sex_full Sex_one Sex_cis Dom_one Dom_selected
|
|
syn keyword acedbMagic Calc_distance Calc_lower_conf Canon_for_cosmid
|
|
syn keyword acedbMagic Reversed_physical Points Positive Negative
|
|
syn keyword acedbMagic Point_error_scale Point_segregate_ordered
|
|
syn keyword acedbMagic Point_symbol Interval_JTM Interval_RD
|
|
syn keyword acedbMagic EMBL_feature Homol Feature
|
|
syn keyword acedbMagic DT_tag Spacer Spacer_colour Spacer_width
|
|
syn keyword acedbMagic RH_positive RH_negative RH_contradictory Query
|
|
syn keyword acedbMagic Clone Y_remark PCR_remark Hybridizes_to
|
|
syn keyword acedbMagic Row Virtual_row Mixed In_pool Subpool B_non_A
|
|
syn keyword acedbMagic Interval_SRK Point_show_marginal Subsequence
|
|
syn keyword acedbMagic Visible Properties Transposon
|
|
|
|
syn match acedbClass "^?\w\+\|^#\w\+"
|
|
syn match acedbComment "//.*"
|
|
syn region acedbComment start="/\*" end="\*/"
|
|
syn match acedbComment "^#\W.*"
|
|
syn match acedbHelp "^\*\*\w\+$"
|
|
syn match acedbTag "[^^]?\w\+\|[^^]#\w\+"
|
|
syn match acedbBlock "//#.\+#$"
|
|
syn match acedbOption "^_[DVH]\S\+"
|
|
syn match acedbFlag "\s\+-\h\+"
|
|
syn match acedbSubclass "^Class"
|
|
syn match acedbSubtag "^Visible\|^Is_a_subclass_of\|^Filter\|^Hidden"
|
|
syn match acedbNumber "\<\d\+\>"
|
|
syn match acedbNumber "\<\d\+\.\d\+\>"
|
|
syn match acedbHyb "\<Positive_\w\+\>\|\<Negative\w\+\>"
|
|
syn region acedbString start=/"/ end=/"/ skip=/\\"/ oneline
|
|
|
|
" Rest of syntax highlighting rules start here
|
|
|
|
" Define the default highlighting.
|
|
" Only when an item doesn't have highlighting yet
|
|
|
|
hi def link acedbMagic Special
|
|
hi def link acedbHyb Special
|
|
hi def link acedbType Type
|
|
hi def link acedbOption Type
|
|
hi def link acedbSubclass Type
|
|
hi def link acedbSubtag Include
|
|
hi def link acedbFlag Include
|
|
hi def link acedbTag Include
|
|
hi def link acedbClass Todo
|
|
hi def link acedbHelp Todo
|
|
hi def link acedbXref Identifier
|
|
hi def link acedbModifier Label
|
|
hi def link acedbComment Comment
|
|
hi def link acedbBlock ModeMsg
|
|
hi def link acedbNumber Number
|
|
hi def link acedbString String
|
|
|
|
|
|
let b:current_syntax = "acedb"
|
|
|
|
" The structure of the model.wrm file is sensitive to mixed tab and space
|
|
" indentation and assumes tabs are 8 so...
|
|
se ts=8
|
|
|
|
endif
|